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Materials ingested into TeSS from Zenodo lose their formatting. The descriptions are provided through the Zenodo API, formatted with HTML tags.
TeSS needs to convert this to markdown for it to dis…
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Hello there,
would it be possible to add a low memory mode for the --derep_fulllength command? Many metabarcoding pipelines need a global dereplication before clustering or denoising. For a large f…
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### Description of feature
Hi (again, sorry).
We would like to test ampliseq with CO1 data as an automated generic metabarcoding workflow, however no CO1 taxonomic databases are currently implemen…
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Hello!
I am so happy to have found this page - I have been trying to separate demultiplexed sequences using ngsfilter for so long, and this code has been so useful!
I have unfortunately hit a prob…
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### Description of feature
Hi, I have a couple of projects to analyse where the primers are degenerate and the last 3 or 5 bases have ambiguities that allow them to match the first 3-5 bases of the p…
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Hi @bachob5 @SantamariaMonica,
MetaCOXI is a very nice and useful database, thank you for developing it.
I would like to use the MetaCOXI_Seqs.fasta and MetaCOXI_Taxonomy_Metadata.tsv as input fi…
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Hello,
My issue is not a technical issue with mothur, rather a question related to my specific pipeline. I am currently using mothur v1.46.1.
I have 10 sites, where I have collected water sample…
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As per #87, it is clear ``amptk_mock1.fa`` has been processed differently from ``amptk_mock2.fa`` and ``amptk_mock3.fa``. It has no line wrapping, no species names, but does seem to have been left pri…
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Hi Mike! first of all thansk for the tutorial and clear info in your page!
I'm following both DADA2 tutorial (https://benjjneb.github.io/dada2/tutorial.html) and your pipeline too (https://astrobio…
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## Update 2021-12-06
To join the nf-core community, please visit https://nf-co.re/join
The most important step is to sign up to the nf-core Slack, which is the hub of the community.
Once ther…
ewels updated
2 years ago