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For example, I have the reaction_name "Isocitrate dehydrogenase (NADP+)", aka ICDHyrm_pos significantly differently in my experimental group. Are there any schematic in the compass resources that I ca…
ahdee updated
1 month ago
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The queries used to find causal models currently look for 2 or more consecutive causal relations between acivities. Metabolic pathway GO-CAMs are connected via this pattern:
```
(MF1) -has_output-> …
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The metabolic pathways are very hard to consume when they display all of the small molecules.
It would be better if there was a toggle to "collapse small molecules" so that you could see only the…
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## Feature request
#### What problem does this feature solve?
When using a different [base](https://vuepress.vuejs.org/guide/assets.html#base-url) it's not possible to use the regula…
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If we're aiming for an orally available pill, then metabolic clearance is relevant. i.e. human microsomal data.
Can we dig up the data for CLint or t1/2 that exist on any MycetOS compounds from the…
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Further information required on metabolic clearance for series four compounds.
@mattodd - do we need to send more compounds?
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Hello,
I am encountering some issues while running METABOLIC-C.pl. I used the following command: nohup perl METABOLIC-C.pl -in-gn /home/.../dereplicated_genomes/ -r /home/.../all-merged-1.fastq,/ho…
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Dear METABOLIC support team,
I ran the METABOLIC-C.pl script and some errors in error file and log file. So, no figures generated. Could you please have a look and give me some suggestions on how t…
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Hi,I want to build other organism genome-model of metabolism and expression (ME-model). I don’t know how to obtain accurate effective turnover rate (Keff) for metabolic enzymes. When you reconstructed…
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Going in the same direction some composite peak in metabolic profile also requires manual zones creation that are then assigned to different atoms.
![image](https://user-images.githubusercontent.com…