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Hi,
I would like to use redbiom to check in which types of samples a taxon of interest has been observed the most.
I used the command below with ctx = Pick_closed-reference_OTUs-Greengenes-Illumi…
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Dear atlas developers/users,
I have generated a gene catalog using atlas. Do you have any guidline how to map back and quantify the proportion of genes (I guess noramlizing by gene length) in the d…
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SilvaDB release 138 is now available for commercial use! See: https://www.arb-silva.de/silva-license-information/
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**Is your feature request related to a problem? Please describe.**
The phyloseq package is the de facto standard for analysis of metagenomics data in R/Bioconductor and conversion to their `phyloseq`…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/mcalgaro93/benchdamic
Confirm the following by ed…
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Hello,
I'm using by the first time the decontam package. I'm trying to reproduce the decontam tutorial (link: https://benjjneb.github.io/decontam/vignettes/decontam_intro.html ) with my own data. …
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1. What is the topic of your lesson or lesson proposal?
Analysis of data related to microbial communities from diverse environments. Specifically, this lesson will focus on analysis of "amplicon" d…
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Hi!
I am trying to run the Taxonomic-Functional-Profiling-Protein pipeline, but there seems to be an error during the sam2rma step.
**This is the command I am using**:
snakemake --snakefile Snak…
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- 1) This genecatalog step is taking me soo long this time :-) (10 days now for 10 samples). I know it's the most time consuming step, but is there some way I can run this more effectively on a single…
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Hello IUC,
**Tl;DR:**
Help us fix tool tests!
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we would like to make sure that our tools are well tested and working in the widest range of deployment scenarios possible…