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biocore
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redbiom
Sample search by metadata and features
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Connection to qiita.ucsd.edu timed out.
#130
kattweigh2
opened
4 months ago
14
Installed Greengenes2 and redbiom in Qiime2 but getting a connection error
#129
waalkes
closed
5 months ago
4
Updated code + tests
#128
charles-cowart
closed
10 months ago
1
Verify redbiom test suite works with Redis 7
#127
charles-cowart
opened
10 months ago
4
Latin1 bug
#126
wasade
closed
1 year ago
0
Discrepancy between metadata search results & piped fetch results
#125
nvpatin
opened
1 year ago
4
metadata search by study id not working
#124
nvpatin
closed
1 year ago
5
Fetch qiita-study --md5 should be is_flag
#123
wasade
opened
1 year ago
0
WIP: Closing out a few issues
#122
wasade
closed
1 year ago
1
Error message fetch-samples
#121
sscansan
closed
1 year ago
0
PyPi version 0.3.8 is 37.9 MB in size
#120
ElDeveloper
closed
1 year ago
1
Allow for resolution of ambiguities while retaining the artifact ID
#119
wasade
closed
1 year ago
0
ping!
#118
antgonza
closed
2 years ago
0
A particular sample always crashes for me
#117
BenKaehler
closed
1 year ago
3
It would be nice to have an easy option to pull a specific qiita study
#116
wasade
closed
1 year ago
0
add msgpack
#115
wasade
closed
2 years ago
0
API/PERF: allow avoiding fetch of taxonomy
#114
wasade
closed
2 years ago
0
Force json
#113
wasade
closed
2 years ago
0
Release items
#112
wasade
closed
2 years ago
0
tentative py3738 support
#111
wasade
closed
2 years ago
0
Updates for py37 and py38
#110
wasade
closed
2 years ago
1
Bug in Querying for public microbiome data in Qiita using redbiom tutorial
#109
AlohaPropolis
closed
2 years ago
1
Code inversion for ambiguities solving in fetch?
#108
cotillau
closed
2 years ago
1
Bug in version up on pip and conda
#107
BenKaehler
closed
2 years ago
5
Expand on test failure
#106
wasade
closed
3 years ago
0
Create main.yml
#105
wasade
closed
3 years ago
1
CI first pass
#104
wasade
closed
3 years ago
0
Support for large numbers of features
#103
wasade
closed
2 years ago
2
How to get ITS amplicon environmental samples
#102
hotblast
closed
2 years ago
2
CTX for ITS data?
#101
hotblast
closed
3 years ago
1
Pulling all available Qiita metadata as a single table
#100
adamklie
closed
3 years ago
1
ran the example, got following errors.
#99
hotblast
closed
3 years ago
5
Fetching many samples is slower than batching externally
#98
wasade
closed
1 year ago
0
Defined Constant to resolve as Str or Num for AST expression eval
#97
ryanc16
closed
3 years ago
1
Remark Python 3.5-3.6
#96
wasade
closed
4 years ago
2
Tickle
#95
wasade
closed
4 years ago
0
Searching commands are incompatible with python 3.8+
#94
ryanc16
closed
3 years ago
4
Possible regression in ambiguity reporting
#93
wasade
closed
2 years ago
0
Resolution of ambiguities on fetch sample-metadata can trigger an AttributeError
#92
wasade
closed
2 years ago
0
Bump version
#91
wasade
closed
4 years ago
0
Resolve ambiguities
#90
wasade
closed
4 years ago
0
MAINT: allow extracting specific metadata columns
#89
wasade
closed
4 years ago
0
Escape periods
#88
wasade
closed
4 years ago
0
Encode variable values for use over URLs
#87
wasade
closed
4 years ago
3
Stable column ordering on test
#86
wasade
closed
4 years ago
0
Illogical results from redbiom summarize metadata-category
#85
rahel31
closed
2 years ago
4
add md5 feature output for biom
#84
antgonza
closed
4 years ago
3
Add API method to obtain the loaded tags
#83
wasade
closed
1 year ago
1
ENH: allow for storing timestamps
#82
wasade
closed
4 years ago
1
Differentiate empty from already loaded
#81
wasade
closed
4 years ago
1
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