-
There's a use case for loculus that purposefully excludes user submission/seqsets and only enables ingest.
Example: I want to enhance open data (Genbank) with any or all of
a) lineages/clades
…
-
### User Story:
As ReportStream, a router of data, I need to identify a sender that can send either HL7 or FHIR (preferably FHIR) so I can route it to DEX.
### Description/Use Case
The original p…
-
Please place an "x" in all the boxes that apply
---------------------------------------------
- [X] I have the most recent version of this package and R
- [X] I have found a bug
- [X] I have …
-
## Feature request
I've just got a TinyG board and hooked it up to UGS nightly. There where some basic stuff that's not working at the moment, like the initialization of the controller. This means th…
-
This todo can now be done AFAICT
https://github.com/nextstrain/conda-base/blob/224ad3997cc7ca17fa6fa2ed29ade37c21b3fece/.github/workflows/ci.yaml#L149-L152
-
### Problem Description
The name "Monkeypox" is being phased out in the international health context and replaced with "Mpox" instead. This is based on an announcement by the WHO on 28.11.2022 her…
-
## Context
In a pathogen repo, there will technically be 3 separate workflows that can be run: ingest, phylogenetic, and nextclade.
It's unclear how we want to set up the standardized GitHub Actio…
-
**Is your feature request related to a problem? Please describe.**
[Pokay](https://github.com/nodrogluap/pokay/tree/master) has been updated to host other priority pathogens in addition to SARS-CoV-2…
-
:cool:
### :pushpin: Explain the Request
Add mutation context to the Mpox track of the Augur_PHB workflow.
### :books: Context
In Nextstrain, users have the option to annotate the Mpox tre…
-
Capturing feedback from curator training session(s). Will likely need to break apart into separate tickets after we prioritize.
- Thanks for providing a demo of the new curator portal. I'm sharing…