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To enable DeepLC calibration and other DeepLC options in fasta2speclib, the fasta2speclib config (from json file) should be passed to the `ms2pip.retention_time` module:
Replace this line:
https:/…
RalfG updated
2 years ago
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hello
my HPC platform doesn't allow connection to the internet. How do I simply download the models without running ms2pip. I can't seem to import predict_xgboost.py module because of circular import…
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Hi,
Thanks a lot for developing a great package!
I'm trying to use fasta2speclib with an HCD model and I'm getting the following error:
![image](https://user-images.githubusercontent.com/40174953…
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Dear Ralf,
I would love to test ms2rescore in conjunction with FragPipe. However, I failed to install it with the Anaconda prompt. The following error code is shown. Maybe you have an idea how to so…
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Dear all,
as I have a larger batch of predictions, I wanted to use the MS2PIP_Server.py script (https://github.com/compomics/ms2pip_c/wiki/MS2PIP-Server-API). The idea is to forward the predictions…
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Dear all,
I have some trouble installing ms2pip on my local computer. After creating and switching to a venv, I tried both, the direct installation via pip and installation of the editable version.…
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Hi, I am trying to run MS2PIP locally, and during the compile step I get the following error:
> clang: error: unknown argument: '-fno-var-tracking-assignments'
> error: command 'gcc' failed with e…
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I am using DeepLC through the MS2PIP website along with the intensity predictor for a list of peptides. Many of the peptides are assigned a negative retention time and I am not sure how to interpret t…
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Dear author:
I am apply your ms2pip to deal with my MS-data. I have installed the ms2pip in linux system. But when i use the ms2pip to predict my spectral library, there is a error:
```
File "~/bi…
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MS2PIP takes the default of 8 CPUs instead of taking the user defined option in config file
2021-02-05 08:57:40 // INFO // numexpr.utils // Note: NumExpr detected 32 cores but "NUMEXPR_MAX_THREADS"…