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### What kind of feature would you like to request?
Additional function parameters / changed functionality / changed defaults?
### Please describe your wishes
Hello:
I have multiome snRNA+snATA…
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Option 1: one package that contains functions for multiple modalities (e.g. transcriptomics, AIRR, ATAC, ...).
Option 2: one package per modality, e.g. `gex-io`, `airr-io`, `epigenetics-io`
## Pr…
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这是您写的源码和蓝牙的部分接口文档，能给个示例吗？
```
```
---------------------------------------------------------------------------
OSError Traceback (mos…
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**Describe the bug**
'ir.tl.chain_qc' states that it should mark cells that don't have any detected immune receptor (as stated in the docs). In the new data structures, this information should be in…
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Hi Seppe,
I have an issue with this step:
```python
consensus_peaks.to_bed(
path = os.path.join(work_dir, 'scATAC/consensus_peak_calling/consensus_regions.bed'),
keep=True,
compr…
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### Report
when runnung
ms.plot_barplot(mdata["rna"], guide_rna_column="NT") during the mixscape pipeline with the data provided by the authors (mdata = pt.dt.papalexi_2021()) I get no output:
N…
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### Report
Hello,
When running the lda visualisation plot as part of the mixscape workflow, I am not getting consistent results between runs, the plot looks slightly different (although very simil…
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Thank you for this amazing package!
**Is your feature request related to a problem? Please describe.**
Currently, there does not seem to be a build-in method to pull or push `obsm` or `varm` annt…
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**Describe the bug**
Hello. I seem to be getting an error at the get_search_space step in the scenicplus pipeline with snakemake. Any immediate thoughts about why this could be? Should my region se…