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Currently iohub [detects label-free channels](https://github.com/czbiohub/iohub/blob/c72d46ad3c02ac89f3556383d1ef08461214de3f/iohub/lf_utils.py#L10-L63) and writes OME-NGFF metadata fields to display …
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https://forum.image.sc/t/create-plate-view-for-mobie/67795/4
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This issue identifies confusion with the `sc-group` and `sc-dataset` nomenclature and contains a discussion about potential replacement names and how those names should be propagated to the broader fe…
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# The goal
I'd like to improve Bdv-Playground and make it capable of handling really big data with low RAM.
# Why it's not ideal currently
It's doing ok, but it sometimes fails because some …
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Hi,
I want to convert ome.tif files to zarr using recOrder.convert, but a key error is produced. I have never encountered this error and am using the usual recOrder.converter command. Do you know w…
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We will need a couple of spec updates to support spotSources etc. They will also require rewriting of the old spec because we will change the table layout a bit (and some potential other changes, see …
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bump the tif-to-zarr conversion from 0.2 to the latest stable version (0.4.0).
currently using this image (https://hub.docker.com/layers/bioformats2raw/openmicroscopy/bioformats2raw/0.4.0/images/sha2…
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## 🐛 Bug
The function `_raw_to_displayed` may raise an exception when called with a Dask array and direct color mode.
In several places in Napari, Numpy and Dask arrays seem to be used interchan…
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Hi,
I am trying to convert a single image to ome.tiff. I tried tiff and jpeg formats but the conversion constantly fails. The image has the following properties:
```
Colour Model: RGB
Depth: 8…
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```
$> dandi --version
0.39.4+2.gb73f44d1
(dev3) 1 21468 [1].....................................:Thu 28 Apr 2022 06:08:44 PM EDT:.
lena:/tmp/test
$> dandi validate-bids sub-MITU01/ses-MR/sub-MIT…