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This thread to serve as a request for a presentation at the next Data Stewards / DCPPC call on Alliance for Genome Resources (AGR) Supplement Aims. Specific Aim 3: "Develop the AGR Disease Navigator t…
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Hi Daniel!
I encountered the following error when using the test data example with show_homologene() and ortholog_resource:
> ```r
> > ortholog_resource + …
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Related to / subtask of issue #257
Initially using data from AGR
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Hi,
When I run this command I'm getting type error because of this line y =pd.DataFrame(x[3].str.split(' ',1).tolist(),columns=['accession','description']), you can check the content of the files b…
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we have been mapping PANTHER LDO to
http://purl.obolibrary.org/obo/HOM_0000020
is this correct?
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**Describe the bug**
UPDATE:
The main issue seems to be that the url for homologene is inactive - would it be possible for this to be updated?
Original:
I'm trying to run `progeny = dc.get_progeny…
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Hi all,
I'm using phyloseq to analyze some metagenomic data for potential microbiome function analyses. I have a phyloseq object that has the KEGG orthology ID and per sample counts of annotated gene…
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Hello!
I have been using TOGA lately for transferring hg38 gene annotations to a newly constructed genome and it looks good so far! However, I do notice that annotations for non-coding RNAs such as…
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Let's say you had 100 strains of a particular species. If you did an all-vs-all clustering of proteins, would those resulting clusters be considered orthologs?