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Is there anyway I can get the pvalue of permutation t-test by using this package? Thanks!
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Be sure to double check that you read the decimal point correctly. The chi2 value for the membership if they picked up an application should be 0.4325. This translate to 43%, while it looks like you i…
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Hi,
We want to present significant GO terms from a GO enrichment analysis on using dag_circular_viz (as in Figure 1 of the preprint). How can we present dot sizes as p values of the enrichement ana…
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Hi,
The output from running a genetic correlation (--rg) has given 'P: 0.' I am guessing this may be because there is a lower limit to what P-value can be reported. I was wondering what this lower…
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Hello,
I did a T test value between two datasets.
Where are the p value and t value plotted in the table?
See the image uploaded
Thank you
Barbara
![pvalue](https://user-images.githubuserco…
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When runnung the `plotEnrich` function by default it takes the 'P.Value' to order the pathways by. Is it possible to change it and order by the Adjusted.P.value? Of course it would be interesting to a…
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Hello! Hope all is well.
I am using both the `enrichGO` and `gseGO` functions. The analyses are going well, but I am uncovering a phenomenon I quite honestly don't understand. I am getting low `p.a…
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Hello,
Thank you for the tool. Can you share how a user can manually define a p-value threshold for significance. I would like to change where the green line falls in the output plots.
Thank you…
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Hi.
```
```
The outputted value is always encapsulated in ` `, even if it contains nothing.
How to do away with this?
Very easy to fix by adding:
`value.substring(3, value.length…
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Thanks for all your work on this package!
I have a question regarding the p-values that are reported after using `rGREAT::getEnrichmentTable` . When running several datasets through the local analy…