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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1445
JN.1+C24023T+C21654T(S:S31F)
GISAID query:C24023T,C21654T,C18894T
No. of seqs: 59(South Korea 57 Japan 1 USA 1)
58 on GI…
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Right now, it seems not possible to include `Unknown` lineages in advanced queries.
This would be very useful to filter out sequences that didn't pass pango QC or are otherwise of questionable qual…
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**https://github.com/sars-cov-2-variants/lineage-proposals/issues**
To reduce the amount of work and to keep this page readable, we in the variant spotters community have set up via the impulse and…
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From branch 26 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1 > M:L46F (G26660T) > G4162A > S:F456L (T22928C)
GISAID query:G26660T, G4162A ,T22928C,T3565C (26 seqs…
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I was wondering if it was possible to save the work we do on collections in case something happens, e.g. compromised password or outage etc.
Once export works, one could also do import.
That may…
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For CIDO, we represent the different sub-variants of SARS-CoV-2 that emerge, including the PANGO lineage identification (BA.1, BA.2, etc.). However, PANGO lineage identification gives a set of common …
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*Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/322
Defining mutations: FY.3.1>G4109T (ORF1a:D1282Y)>The possible branch (Usher could not show the deletion branch?…
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## XBB.1.5 lineage tracker
### "FLippeR Combo"
- [ ] XBB.1.5 [T17124C > T23018C] > C27059T > C28005T(ORF8:P38S) > C1973T, G22927T(**S:L455F**), T22928C(**S:F456L**) > C22624T > G11266T(ORF1a:L3667…
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