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Hello,
I'm using PHEnix for an organism where the reference genome has plasmids.
I want to leave the plasmids in for the mapping and snp calling so that plasmid reads don't map to the chromosome…
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Is it possible to only download plasmids? NCBI Genome has a plasmid-specific page, but I don't see that option in ncbi-genome-download.
Don't know how easy this is?
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Hi,
Thank you for this amazing module, It helped me a lot in learning about plasmids.
I am trying to plot a plasmid map, and have a query regarding the same.
Is there any parameter to rotate or i…
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I am trying to read plasmid sequences from different sources and still getting this error:
> Error in .normarg_isCircular(isCircular, seqnames) :
> the length of the supplied 'isCircular' vector …
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Example orders:
https://github.com/dictybase-playground/learn-github-action/issues/105
https://github.com/dictybase-playground/learn-github-action/issues/84
https://github.com/dictybase-playground/…
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I am having trouble creating a gene database. I downloaded a plasmid table from NCBI for all actinomycete plasmids. But when I run the hyasp create command I get mostly errors:
[all_actino_plasmid…
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![image](https://user-images.githubusercontent.com/17573404/74113401-77b19f00-4b69-11ea-8441-987488f39a86.png)
This is a very useful library, thank you for developing it! I am interested in using D…
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Hello!
Thank you for developing genomad!
Following on from this #62 ...
I'm trying to understand how the number of contigs binned to each MAG affects the number of plasmid and virus classif…
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Dear @iferres and @mgimenez720 ,
Thank you a comprehensive analysis of replication region of plasmids via BLAST, HMM search of rep and RNA sequences. I wanted to ask is it possible to extract the …
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