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Possible with current version; for “sample” meaning “Multi-LIMS warehouse sample ID”:
```
SELECT `value`,count(*) AS cnt,(SELECT taxon_name FROM sequenscape_taxa WHERE taxon_id=`value`) AS name FROM…
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In many cases there is a 1-to-1 mapping between sequencescape study and alfresco study. In some cases, the names are identical. In some cases, alfresco study can (and has) been inferred from sequences…
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Do you happen to have taxon identifiers for the training data in this file?
https://genome.cshlp.org/content/suppl/2018/03/22/gr.228429.117.DC1/Supplemental_Table_S1.xlsx
It's currently difficu…
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Hello! I am encountering a problem as below,
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python run_fold.py --workers 1 --num_models 1 --input_file ../Input_Seq/2pgf.fasta
Starting 2PGF_1|C…
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Dear developers,
My fungi strains are haploidy and I would like to calculate Tajima'D via vk tajima. When I read [doc](https://vcf-kit.readthedocs.io/en/latest/tajima/), it says that require vcf file…
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Please provide as much information as you can:
GO:0043073 germ cell nucleus
The nucleus of a germ cell, a reproductive cell in multicellular organisms.
* **Request to add a taxon constraint:*…
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Index made by gramtools `build` is memory hungry.
Two things:
i)Disk serialisation of index is significantly smaller than in-RAM
For eg on TB dataset:
(yoda: /nfs/leia/research/iqbal/bletche…
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Hello!
Thanks for developing and supporting whatshap!
I'm trying to phase (infer haplotypes) of a _Plasmodium falciparum_ test sample which is a mixture of 3 haplotypes.
First, I called varia…
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Increase data reproducibility by logging stdout, docker images version.
Look into cwl-runner provenence options