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## Project
Implementation of a Variant Calling analisys pipeline for RNAseq data based on [GATK best practices](http://gatkforums.broadinstitute.org/gatk/discussion/3892/the-gatk-best-practices-for…
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Hi,
How many samples do you typically recommend one should use to create a custom PON? I'm trying to create one for GRCh38 with mean cvg around 30x/sample.
Thanks,
Minita
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https://github.com/PapenfussLab/gridss
Dockerfile: https://github.com/PapenfussLab/gridss/blob/master/docker/Dockerfile
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[Layer-wise relevance propagation for neural networks with local renormalization layers](https://link.springer.com/chapter/10.1007/978-3-319-44781-0_8)
Layer-wise relevance propagation is a framework…
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It's only a matter of time before we get support for model aliases, so I'm creating this issue to keep track of them. If you have any that do not appear below, please list them so their primary name i…
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Warning: unexpected second chipset match: "Intel Apollo Lake"
ignoring, please report lspci and board URL to flashrom@flashrom.org
with 'CHIPSET: your board name' in the subject line.
Found Winbond…
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Hi,
I have run GRIDSS on 24 FFPE TNBC tumour samples and used the somatic filtering script to filter out relevant SVs.
When I created rearragement catalogues based on the filtered SVs (rearrag…
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Subtitles - 135 short phrases and about 20 subtitles (700 characters for the spoken dialogue)
The game's dialogue is over here: https://github.com/benjenkinsv95/lethal-company-latin-mod/issues/35
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### Description
It has been mentioned previously that our current methods for detecting CNVs are not working very well for low tumor purity samples: https://github.com/Clinical-Genomics/project…
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This thread will track the progress of running GATK gCNV on SFARI cohort.
For the first trial round following things needs to be done:
- Get all the exomes uploaded on prem
- Collect coverage on…