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For a process (WikiPathways pathway, GO term, or pathway ontology term) find all proteins involved and see how many are expressed in a specific tissue or cell type (using NextPot as the source for exp…
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hi all,
I'm running `GFN1-xTB` calculations (v0.3.0) via the Python API, and after fixing some weird numerical instability issues https://github.com/tblite/tblite/issues/103 I've got `GFN1-xTB` to …
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Most enrichment analysis tools are designed at the gene level and only support gene IDs.
The first step to performing GO analysis for proteomics data is to convert protein IDs to gene IDs and then…
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Please provide as much information as you can:
* **Suggested term label:**
histone H3-K27 methyltransferase activator activity
* **Definition (free text)**
def: "Binds to and increases the …
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(Should this maybe be moved over to https://github.com/sourmash-bio/sourmash-examples/?)
So @bluegenes built an `LCA_SqliteDatabase` using:
```
sourmash lca index gtdb-rs207.taxonomy.with-stra…
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I would like to use the RNPxlsearch node in TOPPAS to identify RNA-Protein binding sites. I want to use various fragmentation mode to get MS/MS data but fragmentation-mode option is not available in …
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**Describe the bug**
There is something fishy with `NM_030582.4`. Take, e.g., this deletion that maps to this transcript: [`NC_000021.8:g.46924426_46924427del`](https://variantvalidator.org/service/v…
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This is of particular interest when modeling PK of proteins and a full blown, free floating target as binding partner is required for proper description of PK, e.g. an antibody binding to a protein, b…
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I am using these structures
https://www.rcsb.org/structure/6D9H
https://www.rcsb.org/structure/5N2S
And both of them contain bound things. 6D9H has a bound G - Protein, while 5N2S has a cytochr…
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As requested by the Slavov lab.
A concern for new users is 'will my data work with scp'? Lower that barrier is essential! GUIs can be a good way to address that.
- [ ] Create shiny interface (p…