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Hi,
I was wondering whether it is possible to use xCell to make cell-type enrichment analysis based on proteomics data.
And if so, should one use raw quantification (label-free, for instance) data?
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Project Lead: Carol O'Brien @cobri
Mentors: William F. Broderick @billbrod and Samuel Joseph Haynes @DimmestP
Welcome to OLS-7! This issue will be used to track your project and progress dur…
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We can now leverage bio.tools to provide nice links from EDAM concepts to bio.tools e.g.
* tools that support _FASTA_ (http://edamontology.org/format_1929) format_ on input
https://bio.tools/?page…
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For large data such single-cell proteomics data, the robust summary aggregation is very slow. You can test this with this example:
```r
library(scpdata)
library(scp)
aggregateFeatures(specht2019…
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I am exploring your tool to score a bidirectional signature in my proteomics data. Can singscore handle missing values in the expression matrix? I tried and I am getting NAs in the score output
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Dear neogilab
I have read the paper, the result is very interesting.
Could you provide the Fractions data for me to test the result?
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input
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@jgockley62 identified inconsistencies in CERAD scores for individuals from the Banner cohort in the original [Banner LFQ proteomics traits file](https://www.synapse.org/#!Synapse:syn9740295) and the …
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Hi PDV developer team,
We have been searching some o-linked enriched glyco-proteomics data using MSFragger. Can we visualize the spectra in PDV? Does PDV handle and show the diagnostic fragment mass…
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Dear all,
First congratulations for your work, pClean seems to be a promising tool for proteomics in R.
I'm working with TMT-10 plex data, do you have any suggestion about the parameters, especial…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/JmWangBio/PepSetTest
Confirm the following by edi…