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We could essentially use a perl/python/awk/R script to sample Illumina base call quality strings from existing FASTQ data to build up an empirical distribution of read qualities and use this as the po…
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Trajectory recordings in which the topology change cannot be read by `narupa-mdanalysis`. Such changes occur for instance when a simulation another loaded by the server; a feature heavily used by @rho…
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Hey,
I am trying to catch up with the latest developments, but alas am stumbling over the following error:
```
$ python airflowHPC/scripts/base_runner.py get_mass
[2024-08-19T09:46:17.402+020…
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### Question
Hello. I was simulating a Franka robot arm in Isaac Sim 2023.1.1. I was also using the [roboticstoolbox](https://github.com/petercorke/robotics-toolbox-python) package to calculate the…
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### Background
After running a Molecular Dynamics (MD) simulation, it is often necessary to parse the output files to calculate the Mean Square Displacement (MSD). The output file, MD_dump, contains …
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### What happened?
I fixed a few problems that will be found in v1.2.3 but these still occur:
1. Clicking on "complete algorithm" in the algorithm controller doesn't work.
2. Going back and for…
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Hi.
I'm simulating long reads from a genome. But the output is `.maf` file. How can I get the `SAM` output?
I want to get HIFI reads so I need the `sam` file and put it into `ccs` software.
An…
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### GZDoom version
The one shipped with 1.0.2
### Which game are you running with GZDoom?
Doom
### What Operating System are you using?
Windows 11
### Please describe your specific O…
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> Failed to the read simultion log file. Check that simulation data has been downloaded and that sim.path or OLS_SIM_DIR point to it
How to fix?
thanks.
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Version: FSK 2.0.0RC2
Reading in any fskx-file with several simulation setting stored (see attached workflow), executing the Editor will delete all simulations other than default.
[https://app.zenhub.…