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Hello,
Question about 'RNA sequencing assay' (OBI:0001177) and 'RNA-seq assay' (OBI:0001271). In OBI, 'RNA-seq assay' is a subclass of 'RNA sequencing assay'. Are there examples of assays that fal…
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If a read aligns partially to the end of a fragment, it won't pass the guard
that requires 90% of its length to be mapped for it to be counted. These reads
should get to count the part that exte…
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Hello,
I am trying to run mcall module but segfaulting. I've tried to google/solve it myself, but I haven't had any success.
I am running a target position specific bisulfite sequencing (not WG…
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There seems to be a problem with submissions of pre-made libraries – in CASM, this is mostly our CRISPR library submissions – these undergo library QC before being loaded on the sequencers, but when w…
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- **Patric database** was found from
Guglielmini, J., Bourhy, P., Schiettekatte, O., Zinini, F., Brisse, S., & Picardeau, M. (2019). Genus-wide Leptospira core genome multilocus sequence typing for …
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Hi,
Thanks for this amazing package, I've been playing with it for a few days, and it will be really useful with my data :)
I have a question regarding the heat trees, that I could't find an ans…
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Dear Alex Dobin.
First of all, thanks for this fantastic tool and all your work during these years to update it.
Recently some colleagues attended the conference Biological Data Science 2022 and…
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This might be a documentation issue, but I've had issues where sometimes expHTS just won't work. It will run, take a fraction of a second, and produce empty results folders minus a few (empty or effec…
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I recently installed biotradis using conda
Name Version Build Channel
biotradis 1.4.5 hdfd78af_5 bioconda
I noticed that I had an…
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Hello, is it possible to run EditR via command line via e.g., passing the gRNA sequence and the .ab1 as input?