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## SBML test suite report
SBMLtoolkit.jl is regularly tested against the [SBML test suite](https://github.com/sbmlteam/sbml-test-suite/tree/master/cases/semantic). The last test was run on October 24…
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Import a model / biochemistry from an SBML file.
@samseaver I think you have existing code for this?
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Hi,
I'm not entirely sure, if this is the right place to discuss this. if not it would be great if someone could point me to the appropriate place.
I'm currently thinking about SBML IO and SBML Id…
tpfau updated
6 years ago
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The code referenced below requires a file to both have the proper file name ending and for its content to be proper SBML/SBGN.
This seems unnecessarily restrictive to me, as the second check is argua…
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When the order of models input to COBRA and then to COMETS changes, the results are changed.
cobra.io.read_sbml_model(model_1)
cobra.io.read_sbml_model(model_2)
has different results from:
cobra…
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I've come across an issue with running the petabtests caused by pysb 1.16, which requires sympy
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Hi,
I've been trying to install sybilSBML without any success.
I've installed libSBML without any problems with:
$ R CMD INSTALL libSBML_5.19.0.tar.gz
I'm inside a conda environment, so …
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Hello everyone,
I found a problem trying to import an SBML model (https://www.ebi.ac.uk/compneur-srv/biomodels-main/MODEL1608100001). It seems the SBML file has something invalid `SyntaxError: inva…
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Dear SBGN team,
i wanted to use SBGN for the first time and tried to convert my SBML model. However, I encountered several pitfalls that made it impossible for me:
1. The link for the only convert…
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**What did you expect to happen?**
Sensitivities to be computed
**What has happened instead?**
`rdata.x` and `rdata.sx` are zero matrices
**To Reproduce**
Compile a model with algebraic expre…