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https://mp.weixin.qq.com/s/XVndy1l2azhMsRDUScpoXw
ixxmu updated
2 months ago
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![image](https://user-images.githubusercontent.com/10649344/73910633-c0fda800-4864-11ea-9fea-efa61b26108f.png)
I merged 8 objects and ran SCTranform and I'm getting these speckles on the umap that I …
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https://mp.weixin.qq.com/s/H0wQbXJLVdve1hpuufk85w
ixxmu updated
4 weeks ago
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Now has updated biodomains in medRxiv paper for I think 18-19 domains.
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**Describe the Error**
I was trying to update a Giotto object and save it in the same location with `overwrite = TRUE`, but when I try it it appears to break the object by erasing some image relate…
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Hi,
I have used STAR solo to align snRNAseq from 10X v3 using the following command:
STAR --genomeDir /h_sapiens/gencode/v38/star/2.7.10a --sjdbGTFfile /gencode.v38.primary_assembly.annotation.gtf…
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Hi,
The new version of STARSolo perfectly mimics the cellranger output. But I was wondering if there was a way to get QC stats like we do from cell ranger.
This is sort of addressed here #660 . …
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Hi again,
I am trying to run the diff_gene_cluster method in order to initialize the population of genes used for panel creation. Below is what I encountered:
_diff_expr=suppressMessages(diff_ge…
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Hi, With 100k single cells + 36 bulk samples for 52k genes, I'm crashing due to memory limitations with 128 Gb RAM.
How much memory do you recommend / is necessary?
Thanks
gevro updated
5 months ago
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Example query:
```
{
"creation_action": "Multi-Assay Split",
"group_uuid": "57192604-18e0-11ed-b79b-972795fc9504",
"direct_ancestor_uuids":["ef3c6d68088d9ecaa92f0105014c4fdd"],
"datasets…