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I was trying to figures out what the problem [here is](https://github.com/MouseLand/suite2p/issues/424#issuecomment-699492089) and did a clean install and ran the tests on the test data with following…
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**1. Operating system (Linux/macOS/Windows):** Windows 10 64 bit, 128GB RAM, no GPU, running in parallel on AMD Ryzen 1950x
**2. Python version (3.x):** Python ver 3.7.6
**3. Working enviro…
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I used to use v0.6.16 (and never had this or any issues) before upgrading to v0.9.0 (what I have currently). I now get an error at the end of a run when it tries to save to a .mat file. I receive the …
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I used to use v0.6.16 (and never had this or any issues) before upgrading to v0.9.0 (what I have currently). I now get an error at the end of a run when it tries to save to a .mat file. I receive the …
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Hi Carsen,
First thanks a lot for the amazing work you've done with Suite2P.
I've updated the Suite2P version in order to save the output files in NWB format. I've set the save_NWB input to 1. It ru…
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Hi Carsen,
after updating to suite2p 0.7.3 the code terminates during spike deconvolution. Here is the error it gave me:
>>>ERROR>ERROR>ERROR>ERROR
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Hi,
Is it possible to switch off spike deconvolution when running the script? If so, how should I implement it when running Suite2p in Jupyter Notebook?
Best
Wojciech
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Hi, From Wiki and the paper, it suggests `S(i)` is the inferred number of spike events at i-th frame. I am thinking to use `S(i)` as a proxy to calculate firing rate. However, in CalmAn (Python packag…
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Creating this issue to summarise the main changes I implemented in the workflow and other discussion points:
- *Introduction*, *Sources of variability in scRNA-seq data*, *Methods* and *Reproducibi…
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Hello to all wwylab group
I am currently working on equine embryos. We collected embryos from mares of different conditions at the stage of the expanded blastocyst (D8). At this stage, the embryo i…