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Dear basenji developers,
I would like to use basenji to model ChIP-seq data. In particular I would like to train a model using the ChIP-seq data for a certain transcription factor (TF). The data can …
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I think it would be a useful exercise to find a paper or two which use one of the existing tools (UCSC, Wash U epigenome browser) to test hypotheses related to gene regulation (ideally using some Cist…
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At the 5/16 meeting, we spoke about ways to re-organize Druggable Gene Categories for v5. I've done a preliminary analysis, mostly for my own benefit, but hopefully this spurs on ideas about how we co…
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https://doi.org/10.1101/238683
> Motivation: Oxford Nanopore sequencing is a rapidly developed sequencing technology in recent years. To keep pace with the explosion of the downstream data analytic…
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### Bacterial Quorum Sensing and Microbial Community Interactions
_DOI: [10.1128/mBio.02331-17](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5964356/pdf/mBio.02331-17.pdf)_
- Introduction:
`…
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Hello,
I am not clear what 'translation factor activity, nucleic acid binding' versus 'translation repressor activity, non-nucleic acid binding' are supposed to represent.
* GO:0045183 transla…
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Hi.
Would it be possible to have the Sequence Ontology terms in NOCTUA, so we could use them in the models?
Thanks,
Jesualdo
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Propose to add a new term to annotate C. elegans genes to a more specific child of 'Wnt signaling pathway' (GO:0016055) for the cell fate specification pathway in the early embryo that combines elemen…
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```
hh-suite commit ID b1aa73afae4811c7
Operating system: linux, compiler: gnu 4.9.2
```
Hi,
When using both pdb and pfam:
`hhsearch -d /home/ucgajhe/levine/databases/pdb70/pdb70 -ssm 4 …
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`Glycosylation` is mapped to `transferase activity, transferring glycosyl groups` (`GO:0016757`).
This needs to be changed to `protein glycosyltransferase activity` - which have been requested by @…