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Dear Kevin,
You did not recommend users to use the conda packages of these tools; however, since I am not familiar with RepeatMasker and
RepeatModeler, I used conda packages of these tools.
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Lets put here different ways you have tried out to get fitness from satay data
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An error occurred when running the sif file. --annotate 1 --plant 1 --intact_anno 1
```
2024-07-24 20:57:48,357 - main.py[line:316] - INFO:
--------------------------------------------------------…
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Hi, rmhubley
The results of version 4.1.5 (Dfam 3.7) compared to version 4.1.3 (Dfam 3.6) for the same species clearly have a higher proportion of the former masked, is this normal? Also, I compare…
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Hi!
Thank you for developing such an interesting tool to identify plasmids.
So I did use the example's settings to perform a first analysis of the assembled contigs fasta file I have and I took a…
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Hi Evan
I was wondering if you could explain me the LTR age output.
How is it calculate the age in each LTR family? The summary file have these columns:
Superfamily Family Family_size ElementID D…
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As suggested by Dr. Martin Hemberg following our recent email correspondence, I’d like to summarize some issues I encountered with TransposonUltimate (ReasonaTE and RFSB). I fully recognize and apprec…
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I would like to use the pipeline on a large plant genome. Would it be to run separately on chromosomes or directly on the entire genome? Are there any requirements for CPUs and RAM? Have you ever test…
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Dear Kevin Riehl,
I have the issue, both conda and mamba have issue with my system.
![image](https://user-images.githubusercontent.com/70749594/229532984-64ad6ef6-0215-4a96-99c7-85a2b6aae515…
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Hello!
After get the expected result with the S2R data, I tried run TELR on other fly data.
Then I got the OSError:
`OSError: [Errno 36] File name too long: '/home/boxu/temp/telr/result/intermedi…