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Analysis implementation by @ludovico-lanni :
```python
my_experiment = Experiment(metadata={})
metric_1 = Metric(alias, components=str of tuple(str,str) for ratio metrics)
metric_2 = Metri…
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Dear Aldy Team,
I analyzed targeted sequencing data of 100 PGx genes aligned to the hg19 reference genome using both BAM and VCF files in Aldy v4.4 (Python 3.9.7 on Linux 3.10.0-1160.95.1.el7.x86_6…
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At the moment we have "Global variant zygosity count" which is non-germline samples
We can support multiple ones, we just only have 1 at the moment
Need to work out what people would like to split b…
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Hi Dr. Ge,
I am working on the PRScsx integrating target data (AFR, n=2000) and base data from EUR and AFR). I am not sure I fully understand how to split the target dataset into validation and tes…
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https://github.com/openEuler-RISCV/QA/tree/main/testreport/24.03/round1/performance-test/ltp_function
```
tag=sched_rr_get_interval01 stime=1714359195
cmdline="sched_rr_get_interval01"
contacts=""
an…
laokz updated
2 months ago
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I'm very sorry to bother you. I have been reading your three articles on the use of pcadapt for detecting signals of natural selection, and I am very interested in the topic. I have also tried the pre…
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Lirical requires Exomiser variant database to run analysis with VCF file, but there are multiple variant database releases out there. We need a way to check that LIRICAL will work with a given databas…
ielis updated
3 months ago
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Hi,
I am writing to seek your assistance with an issue I have encountered while using the iWhale pipeline. It is a highly efficient tool, and I appreciate its capability to manage reanalysis seamless…
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Hello
Thank you for this great tool.
I am trying to call TE insertions on a tree genome which is ~ 830 Mb.
My config.yaml file is as follows:
```
# all path can be relatif or absolute
D…
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Hi,
Thanks for the invaluable tools and tutorial resources you provided!
I am currently working with imputed data from the UK Biobank, and I have encountered a challenge regarding the storage si…