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Contribution guide can be found [here](https://github.com/Ensembl/ensembl/blob/master/CONTRIBUTING.md).
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Hey!
It seems that timeflux_hackeeg requires gnureadline, which is not available in Windows OS. Maybe pyreadline3 would be a solution.
Is there any workaround?
Collecting timeflux_hackeeg
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Hello, perhaps an obvious question, but I wanted to verify.
Is the included file "uORF_5UTR_GRCh38_PUBLIC.txt" the same as the "uORF_starts_ends_GRCh38_PUBLIC.txt" mentioned in the documentation?
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bwubb updated
1 month ago
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Hi,
I was just wondering how the _make_snpfile.py_ deals with annotations in different transcripts/genes of the same variation. Does the script only take into account only the first instance of the …
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I would like to present a test report for this plugin because I found that someone else met the same issue before, but with few clear answer.
The purpose of this plugin is to extract columns from V…
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https://github.com/genome/analysis-workflows/blob/a93be3183c2218ee50f13ae2675dd1cde563fdbc/definitions/tools/vep.cwl#L6
The vep launch command currently uses some non-standard options that can be u…
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@ambj god, you are here, I am urgent for your help. no version of vep has the variant_effect_predictor.pl and variant_effect_predictor, what should i do, help, **really very urgent**.
[image](https:…
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- build mehari transcript DB (ensembl):
- download cdot for ensembl and grch37 / grch38
- download ensembl FASTA for transcripts
- create / fill seqrepo with ENSEMBL FASTAs
- build…
tedil updated
5 months ago
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Hi,
I've put into a separate assets data needed to run germline analysis for Homo sapiens here : ~~https://github.com/apraga/human_genome_assets~~ https://github.com/apraga/germline_analysis_vep
D…
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Hi,
When I use read.maf to read maf file, but almost variants are silent(silent variants/all variants: **16874**/17013).
I am unsure about that is annotation problem or something.
`df = read.ma…