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Got this error message while running ViralClust with SARS-CoV-2 alpha genomes (152,307 non-redundant seqs).
`Traceback (most recent call last):
File "/home/nu76fet/programs/viralclust/bin/hdbsca…
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I tested speciesprimer and wet the experiment to verify a few bacteria, which did very well.
Thank you for your great program!
I want to use it in viruses primer design
How do I use the SpeciesPrim…
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I am trying Cenote-take. Everything was fine until running tbl2asn step. Kindly check the following logfile
```
[tbl2asn] ERROR: Invalid inference value tRNAscan-SE score:33.8
[tbl2asn] ERROR: In…
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Hi Ryan,
Great tool! I've been using it for a couple of side projects and seems to work great (python3 version). However, now I want to submit some human cytomegalovirus genomes (HCMV) and I found …
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Hi Gabriel,
I am trying to blast with unmapped fastq files of STAR aligner. I found you on GitHub. BLAST takes only fasta files. So, my question is, do I need to do assembly of these unmapped paired …
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- 3 virus grps
1. reference
2. redefining invertebrate rna virome data? Zika?
3. segmented, assembled (FMTV)
Zika (including raw), FMTV, study Holmes, Flaviref, Flavi all (deduplicate)
- q:…
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**Assignee:** Ali Haider Bangash
The first step is to identify what data could be integrated through a knowledge graph and what is available. What did the other Hackathon teams accomplish? What is …
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Is VAPiD suitble for metatranscriptome virus? Or only some special Virus?
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I am getting an error when I try and run Clark with 1.5Tb of RAM for a binned fragment genomes (relatively small). I did install all the databases including viruses and Eukaryotas. What can I do to re…
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Just a suggestion for the [database build step](https://bioinf.shenwei.me/kmcp/database/#gtdb). Since the sample size is pretty big, it's worth using the [`--enable-score-calibration` in geNomad](http…