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Hello Emese,
Firstly thank you for creating this repository, it is a really nice simple-to-use set of functions for COI databases. I'd like to ask your opinion on using it for making databases for …
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Hi, I'm trying to use Ananke on some time series data I have, but I've run across some issues during the "tabulate" step. Any help would be much appreciated!
**My command:**
`ananke tabulate -i /m…
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In R_block_11, why the variable used in y axis is perb.rare@matrix, I would think if the expected rho value should be plotted rho.rare@matrix should be used instead.
Also, I was a bit concern about…
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Thanks a lot for the decontam package. i am extremely new to programming and i tried out decontam .
i started with the "iscontam" function
1) The first graph is a histogram which influenced my c…
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Hi Taruna or Holly!
I just wanted to make sure I understood how the mapping file for already demultiplexed fastqs should be set up.
- BarcodeSequence is in my case not needed (since reads are al…
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Hi,
while looking for tool to analyzie our CRISPR data I encountered yours. I'm not sure though, if this can do what we need.
In our CRISPR run, we have our guides in the R2 file of the pair, so…
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Hi
From #14 It seems that MotifSeq could demultiplex a bundle of fast5 to retrieve the fast5 for each strains. Is this right? Or there is some options in Squiggle Kit to do the same?
Thanks
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Hi Ben,
Apologies for the multiple questions. I ran singlem separately on my metagenome reads and my MAGs. I then separated each marker and clustered them using the default species-level identity. …
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We need to do a 'true' power analysis for readcomb - we know it detects phase changes, but how often do we expect it to actually catch them in real data?
We've looked into [ART](https://academic.o…
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Hi, I'm getting the following error while running the pre-compiled tarball (`https://github.com/Weeks-UNC/ShapeMapper2/releases/download/2.1.5/shapemapper-2.1.5.tar.gz`) on Ubuntu 20.04.
```bash
…