-
BPO | [4899](https://bugs.python.org/issue4899)
--- | :---
Nosy | @tim-one, @rhettinger, @terryjreedy, @abalkin
*Note: these values reflect the state of the issue at the time it was migrated and migh…
-
BPO | [1105286](https://bugs.python.org/issue1105286)
--- | :---
Nosy | @tim-one, @rhettinger, @terryjreedy
*Note: these values reflect the state of the issue at the time it was migrated and might no…
-
Hi Nick,
Thank you for developing this great tool. I have used screpertoire successfully. However, I am wondering how I can identify the clonotypes with the most prominent sequence so I can visuali…
-
Hi,
We have noticed a lack of consistency between Nextclade versions on at least one mutation:
The deletion of nucleotides 22029-22034 on previous versions (tested on 0.12.0 and 0.14.4) is trans…
-
As per #87, it is clear ``amptk_mock1.fa`` has been processed differently from ``amptk_mock2.fa`` and ``amptk_mock3.fa``. It has no line wrapping, no species names, but does seem to have been left pri…
-
For environmental samples I'm loading, attribute "tested for presence" has been added to attributes. As it stands, what it was tested for is going in the remarks. Unsure how well this information will…
-
First, I'd like to thank you for previous help in getting anvi'o working.
However, now that I can use anvi-refine to improve bins, I realized that I am a bit stuck on the deeper issue of when exact…
-
Description
**Sub-lineage of**: B.1.617.2, Clade 21J (~56K sequences, including a ~10K sub-clade where ORF7a:45L mutates back to 45P)
**Earliest sequence**: 2021/4/15 (the UK)
**Most recent sequenc…
-
Would be useful for high or variable coverage datasets, and better matching the published analysis of some of the existing worked examples.
e.g. Quoting the Muri et al. (2020) paper used as our ``d…
-
I was wondering ... if it is advisable to use a pangenome file instead of genomes. Technically it works, but: does it make biological sense to do this?.
Thanks in advance.