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@mumichae
There seems to be a bug in the runSeurat function, maybe it's connected to my seurat/scanpy version. It breaks at the IntegrateData() step. I used the merged_adata.h5ad for testing.
Error…
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Hi, thank you for providing this great package.
I want to define the root of the pseudotime with oder_cells(). When I manually pass cell ids instead of using the shiny selector I receive an error me…
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Hi,
After constructing the Arsenic (As) network with separate nodes for each element redox state I tried to plot community cluster (independent variable by COV (dependent variable). The community …
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Yesterday I moved to a new server and I had to install miniconda3, Jupiter and all the necessary modules for my scRNA-seq analysis including scanpy
I can read fine an h5ad file and run various st…
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Hi,
I executed the scgen data integration using the following command:
```
./runIntegration.py -i /storage/groups/ml01/workspace/maren.buettner/data_integration/data/human_pancreas/human_pancr…
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I got the same error [#19](https://github.com/cole-trapnell-lab/monocle-release/issues/19) , but I can not mange it! any help?
```
> cds
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### 指摘事項
環境構築できない code : 0-2起動しない
### 指摘箇所
ページ番号: p6
colabの仮想環境に直接git clone(google driveではなくて)
![スクリーンショット 2019-11-28 11 31 04](https://user-images.githubusercontent.com/7962022/69772184-99d…
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Dear scVelo community. Great progress that you made in the RNA Velocity field.
I have been having a problem when I try to plot.
If I run:
`scv.pl.velocity(adata, var_names= "Snupn" , colorbar =…
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Hi,
I created a diffusion map on 123.000 cells, based on 9 parameters (its a flow cytometry dataset). Now I am using Slingshot to calculate the pseudotime, however the curve is really dependent on …
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I get the error below when trying to run the following:
`>>> sc.tl.rank_genes_groups(adata, 'louvain', groups=['5','16','19','30'], reference='0', method='wilcoxon')`
```bash
C:\Users\myuser\An…