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Hi, @cbergman
Thank you very much for your pipeline of finding TE inserts from resequencing data. I have a question about TE consensus sequences.
I got the consensus sequence from the reference gen…
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Header reformatting fails on a genome where the sequences are named sequentially, with sub-scaffolds such as:
```
scaffold_1
scaffold_2
scaffold_3
scaffold_4_3
scaffold_4_2
scaffold_4_1
scaf…
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Hi Toby!
I've been analysing the results from running the latest version of earlGrey and ran into an error when using bedtools coverage with the final gff made by Earl Grey (found in X_summaryFiles…
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Dear all,
We have installed mcclintock-2.0.0 in our cluster and we ran it with the required options:
```
#!/bin/bash
#SBATCH --job-name=macclintock2
#SBATCH --cpus-per-task=1
#SBATCH --mem=1…
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Hi Cactus designer,
I am working on a plant genera (13 species) with one reference-level assembly and 12 fragmented draft assemblies (100k-200k scaffolds) and the genomes are highly repetitive (~65…
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Question from https://github.com/parklab/xTea/issues/20
> Hi, I tried using >5900bp as the cutoff for the full length L1. I run hg38 first to see whether I can reproduce the result in the provided …
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Hello!
I just installed Cactus, but I've come to a failure message I cannot resolve. That's what I get:
```Due to failure we are reducing the remaining try count of job 'progressive_schedule' k…
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https://mp.weixin.qq.com/s/q0_rzikXa5BfmRdLyKln8g
ixxmu updated
7 months ago
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Hello,
I have a little confusion on how to make the taxonomy file and the location gff file. I tried to make them from the RepeatMasker out file from scratch.
But the tool complains that it do…
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The respect teacher :
I used EDTA to analyze my genome and got a high proportion of helitron prediction results. I got different but high results on the two versions of the genome.Then I tried …