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Hi...
while trying to assemble with 20 Gb ONT data I'm getting the error called Illegal instruction.
I'm not sure what is this error means and how to tackle this. Could u please help me in fixing th…
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Hello,
I am trying to fill in a gap in a chromosome. I am using reads that I mapped to the area using minimap2. Every time I run canu it failes in the same place, alignGFA fails. I have checked the…
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Hi,
Is there any way to get only unitigs instead of contigs from megahit? If yes, can you please let me know the parameters need to be set for this?
Thanks.
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May I suggest a couple of edits to this readme?
(1) The **Options** section does not reflect the current version. I.e. it is not the same as is currently shown with --help. Specifically, descripti…
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Hi,
I have run the assembly and apparently it works without error (see log below).
But I would like to know what is the name of the final file (the contigs) ?
`
./Bwise.py -x Sm2.trim.180.pair…
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When we use bcalm on multiple read files like this:
../bcalm/build/bcalm -in file1,file2
we get
...
Nb bglue threads: 8
unitigs graph destructor called
EXCEPTION: Unable to open bank 'file2…
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Hello
I am hitting an issue with canu failing at:
cd unitigging/4-unitigger
./alignGFA.sh
GFA alignments failed.
I am trying to assemble the lamda sequence reads from the ONP la…
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I am testing canu using ecoli and it is failing on our PBSpro cluster doing the alignGFA. The error in canu.out is;
```
cd unitigging/4-unitigger
./alignGFA.sh
GFA alignments failed.
```
…
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(mykrobeenv) [appbuild@ai-submit1]» pip freeze
biopython==1.70
easybuild-easyblocks==2.9.0
easybuild-easyconfigs==2.9.0
easybuild-framework==2.9.0
future==0.16.0
ga4ghmongo==0.0.1.2
mongoengine…
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I've run canu-1.5 for a huge genome with (only) 25x PacBio data on a grid:
`./canu-1.5/Linux-amd64/bin/canu -correct genomeSize=huge(>10g) corErrorRate=0.02 batThreads=64 batMemory=250 maxThreads=1…