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After running `standardrb --fix` I still get this repeating error. I don't feel I understand this well enough to mess with it.
```
(base) simonc@Simons-15-MBA-225 ruby-flightplans % standardrb …
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Petite régression sur staging, lors de la création d'un bcf côté plate…
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Hi, I am comparing two vcf file, and get the following errors:
```
[W] overlapping records at 1:6799149 for sample 0
[W] Variants that overlap on the reference allele: 1346
[I] Total VCF records…
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Hello Delly author:
When I tried to compile multi-threading mode on our HPC cluster, RHEL 7.9, I see these output and hit the errors:
we use gcc/9.3.0 and openmpi/4.1.1
$ make PARALLEL=1 -B sr…
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Continuation of this email thread with keilbeck&genetics.utah.edu & evan.christensen&utah.edu, from tfallon&ucsd.edu. That thread resolved to give a shot at SO sponsored submission of bioinformatics f…
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Hello
I am trying to install htslib-1.3.1 on Ubuntu 12.04 using ./configure and make but getting the following error message. Also I have verified that zlib1g-dev is installed and up to date on the se…
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Not an issue, just thought I'd stop by.
A while ago I mentioned I was working on a Latex language server, and the JSON communication was "almost complete".
That was an incorrect remark.
Howev…
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I have many large (indexed) vcfs of the form `${CHROM}_${CHUNK}vcf.gz` and was looking for a quick way to get the coordinates spanned by the file. I know that given a region, the index can be used to…
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If the `PS` format field has type `Integer` but the _values_ are strings, then `cyvcf2` will skip the variant but not throw an exception. I would have expected, by default, that the underlying error …