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Hello,
I encountered an error related to the presence of an alternative contig on which Spectre wanted to make the CNV call, whereas I only wanted to make the call on the canonical contigs.
Ev…
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Overview:
This needs to be a stylized, step-based form that users fill out when first creating their account, or should come back to.
Requirements:
- Use React Bootstrap and **conform to the …
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**Submitting author:** @JeanMainguy (Jean Mainguy)
**Repository:** https://github.com/genotoul-bioinfo/Binette
**Branch with paper.md** (empty if default branch):
**Version:** v1.0.0
**Editor:** @arf…
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Thank you for making all these bioinfo scripts, they are very useful!
I'm constructing some karyotype chromosomes now using some de-novo genome assembly, and I'm trying to adopt the doBlastzChainNet.…
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Hello,
While running the SigProfilerExtractor (version 1.1.21 and 1.1.23) I encounter the following error:
```
Time taken to collect 500 iterations for 1 signatures is 308.93 seconds
Optimizatio…
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## Description
For two flow cells, it seems like they can not be retrieved from the PDC. Specifically flow cell `HHH5TDSX2` and `HKJL7DSXY`. Here is an example of a log (`/home/proj/production/logs/c…
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### Description of the bug
Dear SAREK Team,
I want to use Somatic variant calling, but pipeline completed with errors.
Thanks in advance for your help.
Best regards,
### Command used and te…
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Hello,
Great tool.
Is it possible to display the haplotypes labels from GFA P-lines or W-lines into the TSV outputs, as well as the HTML/PDF outputs ?
I tried with different GFA files, containin…
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Hello Xiaofei,
I could not go through the haphic pipeline with this command `haphic pipeline scaffolds.ref.fa HiC.filtered.bam 20 --RE GATC,GANTC,CTNAG,TTAA --correct_nrounds 2 --remove_allelic_lin…
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Hello Cheng-Kai,
I come to the "5.4 Generate final summary table" process! (I skipped the 5.3 SNV profile at this moment.)
But unfortunatelly, I got another error message, and has not come to the…