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Inspired by https://github.com/common-workflow-language/cwltool/issues/584
- [x] update the spec
- [x] add an explicit conformance test
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I implemented the first step of the mapping pipeline using `bwa mem`. It is viewable here:
https://dockstore.org/my-tools/registry.hub.docker.com/dailyk/dockstore-tool-bwa-mem/bwa-mem
This conta…
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## Feature Request
Simple launch with using Dockstore CLI.
### Desired behaviour
As a user of the site I'd like a launch with button that let's me see the Dockstore CLI commands I would use to local…
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### Environment
- TeXstudio: TeXstudio 2.12.10 (git 2.12.10)
- Qt: Qt-Version 5.11.1, kompiliert mit Qt 5.11.1 R
- OS: Mac 10.13.6 (17G65)
- TeX distribution: texlive
### Expected behavior
…
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When writing the DataCrate spec I started using the same JSON-LD style as used here, where properties are in-line.
```jsonld
{
"name": "Dataset of repository sizes in CWL Viewer",
"des…
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Not sure this is the right place to start this type of discussion, but here it is.
I feel I shouldn't be alone wondering if there is anything we can do to deal with the situation that there are so ma…
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Hi Brad,
We use a custom vcfanno config in our production environment. Up until now, we've used a full path to define the source files. When we update, I'd like to use a shortened path, like in the…
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Hello CWT! We have projects at OGC that calls for implementation of Workflows using CWL runners. We plan to use Toil, but I would like to know how you plan to use Airflow. Maybe there is a good opport…
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According to https://pvactools.readthedocs.io/en/latest/pvacseq/run.html, there should exist some kind of help for pvacseq: `pvacseq run -h`. But it craches...
```
bio@bio-server:~$ lsb_release -a
…
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Not sure if I am doing anything wrong, but it works that way with the CWL tool description reference implementation. Any advice would be appreciated.
Here is the workflow and a YAML job description…