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Hello,
when I am executing gapseq fill with my model, in the end I get:
> Top 10 produced metabolites:
> NA:NA
> Error in .checkTypos(e, names_x) :
> Object 'ec' not found. Perhaps you int…
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Hi @Hao-Chalmers
https://metabolicatlas.org/explore/Human-GEM/gem-browser/metabolite/MAM02679c
this page talks about 'pantetheine' but displays 'palmitoyl-coA' as in
https://metabolicatlas.or…
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Hi, I am the beginner of GEMs, I learn the usage of COBRApy through the tutorials in [https://cobrapy.readthedocs.io/en/latest/](url), I encountered a problem when using the model of yeast8.
After …
LGJee updated
2 years ago
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I got CER of 0.06 on im2latex-100K.
But I can't get good results from the API.
Please give me some advice.
# ls -l checkpoints
drwxr-xr-x 3 root root 4096 Apr 13 15:40 'epoch=1-val'
drwxr-xr-x …
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#### Problem description
I was changing around some of the variables within the model.medium; I found that setting the medium using model.set alters the optimization objective.
By setting th…
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Hi there,
I am trying to run a GSA using Reporter Metabolites using a genome-scale metabolic network reconstruction from the [BiGG Models database](http://bigg.ucsd.edu/).
Unfortunately, when I …
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Hi,
I'm trying to gap-fill my model, using the BIGG universal model as reference, but for some reason I can't load it.
I've been using a code from a jupyter notebook I found in the cobrapie gr…
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I'm working through testing the latest production version. Here are what appear to be deployment-related issues that I've encountered.
## Issues
- [ ] 2 502 errors in submitting simulation runs fo…
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The only really important feature missing from `CoreModel`s is genes and gene reaction rules. What is the most efficient way to add this information to the models and still have it be efficient?
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Somehow the simulators database lost new versions of tools, and instead has old versions. Perhaps this is due to recent issues with the deployment, where we were unintentionally using a different Mong…