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As of the 1.9 release, the context building in cellxgene-census has broken the ability to pass a user-specified context with a s3 region != us-west-2. The code in _build_soma_tiledb_context() clobber…
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If I install tiledbsoma using the standard "pull from git" it fails to build and install correctly. If I add the `-e` flag to `pip`, it works. It seems that something may be wrong with setup.py?
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1. Ticket 1: Stop gap for next sprint -
1. Check with KNI and Joyce on how the analytics broke
2. Write a test to cover the root cause
Write an e2e test for:
1. Trigger an event through user…
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Dear developers,
I was looking for a way to import customized pathway database (e..g, gmt file) for geneset visualization and gsea analysis. Do you have any suggestions?
Also, the new version of cel…
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A number of users have expressed frustration and confusion when `get_anndata(*, organism = "homo_sapiens")` or `get_seurat(*, organism = "homo_sapiens")` raise an error since currently the allowed val…
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Hi,
I am trying to build a docker container based on the steps from VIP - https://github.com/interactivereport/cellxgene_VIP:
```
FROM python:3.8
COPY ./cellxgene_VIP /cellxgene_VIP
RUN ap…
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Hi, first, Thank you for creating a very robust tool.
I have a problem for importing scprint like this.
`ImproperlyConfigured Traceback (most recent call last)
Cell In[2], …
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**Reason**: Plausible found that with their default setting approximately 6% to 26% of users have ad blockers set up such that plausible analytics for cellxgene would automatically get blocked. This m…
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Hi,
Thanks for putting the benchmark together. I'm happy to have a look why the results for integration are that different from e.g. OpenProblems https://openproblems.bio/results/batch_integration_em…
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**Note**: This is a placeholder epic for Dev to add child issues following an assessment of required changes.
The changes to the cellxgene-schema CLI are tracked separately in [cellxgene-schema must…