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We've been needing remote logging for statistics for quite some while. Today, I wrote a very minimal implementation of SV_ConsoleOutput to fill that gap.
Cvar is named after the Source engine one. Th…
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Hello Mr.Ruan,
I'm new to bioinformatics and genome assembly. I noticed SNV-Cov plot might be used for the redundancy in diploid genome. But, if I map the hifi reads of the child to the haplotype ass…
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Hi,
In your NM paper, you mentioned that your work 'reveals a set of high-confidence de novo SVs confirmed by multiple technologies'. However, I could not find your released SV set. In your data rep…
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Hello,
I am using hifiasm to perform hifi-only assembly of a allopolyploid species.
While the basic metrics are good (high N50, Complete BUSCO>98%), I got only 57% of Duplicated BUSCO.
I suspect…
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Has anyone been able to successfully convert the generator model to torchscript?
I receive a bizarre error: while tracing works
```
zero = torch.full((1, 80, 10), -11.52).cuda()
with open("hif…
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I'm currently working on assembling HiFi reads for a highly heterozygous species. When I run the following command:
``` hifiasm -o .asm -t49 -f39 read.1.fastq.gz read.2.fastq.gz```
I receive the…
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Using the May 8th build from http://83.212.96.171/galaxy-s2/latest/ , my Samsung S2 will not boot up. It seems to be stuck in a loop about the audio driver maybe? This is the loop that logcat shows:
…
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Hello
I need a suggestion on running the structural variant calling on hifi data from two SMRT cells. I have two aligned bam files from same subject (run in 2 smart cells, PacBio). I tried doing th…
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Hello, the species I studied is haploid. After using hifiasm software to assemble hifi and ont data, the test.bp.p_ctg.gfa results showed that the genome size was correct and there were more contig. G…
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This is an automated proposal to look at a commit made by Maki and import it into [Overte](https://github.com/overte-org/overte)
| **Commit:** | 364c2e1d288fb1d2d477b9e5628e46884715ba1f |
| --- | --…