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Hi shujun,
My purpose is to detect TE insertion in my resequencing data, then I extracted the 'unmapped mate' sequences of 299582 singletons (one mate mapped, the other unmapped) to conduct blast wit…
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Hello! Thanks for this good workflow. I thought one input file (TE_GTF) `danRer11.TEtrans_uID.gtf` in `3.make_TE_classification.sh` may be incorrect (shown below).
```shell
TE_GTF="./data/**danRer1…
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Dear @TobyBaril
I'm trying to install EarGrey, which will be super useful for my thesis, but there is an error with conda during ```./configure``` step.
```
Checking RepeatMasker and RepeatMod…
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Hi,
I have question. Is there a way to get the Target Motif from ID/Name.
I just downloaded gff3 created with RepeatMasker and published by a team on new version of the genome of Chlamydomonas (v6…
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https://mp.weixin.qq.com/s/K12dpQRcvbQz2xgCfLP94w
ixxmu updated
7 months ago
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Hi Braulio,
again thanks a lot for the help with the analysis here and taking the time. Now i have ran pipeline al the way to the end and in the last object I do get some SoloTE items in my list o…
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**Describe the bug**
On .eu and .org (23.0), when I click on repeatmasker in the tool box, it opens version 4.1.1 instead of the latest 4.1.2-p1+galaxy1
Maybe because of "p1" in the version?
**Ga…
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Hi, @oushujun
I tried LTR_retriever after making genome.fa.rawLTR.scn by running gt ltrharvest and LTR_FINDER_parallel but witnessed a serious error below.
$singularity exec /usr/local/biotools/l…
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Hey,
![image](https://user-images.githubusercontent.com/126332368/221414021-094bacb2-e18f-46f4-9a5f-7e15704de1af.png)
Can someone help me with this question? I'm not sure what has gone wrong, or w…
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Hi there,
I am currently analyzing some samples and came across this result from one of my analyses:
```
##RepeatRegion=chr11-639647-640306-CCCCGCGCCCGGCCTTCCCCGGGGTCCCTGCGGCCCCGACTGTGCGCC
#Re…