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Hi,
Thanks a lot for creating a fantastic tool, I am currently stuck with RUN scAnnotation step the program abruptly ends at [2021-04-13 22:09:05] ---**--: cells malignancy annotation. step and throw…
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Hi @federicomarini
I have setup ideal shiny server on my end. Everything works correctly - however on the Report Editor tab I keep getting this error message - `An error has occurred. Check your l…
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When I use data.table within a function, for example in debug mode, data.table does not work
`#` [`Minimal reproducible example`](https://stackoverflow.com/questions/5963269/how-to-make-a-great-r-r…
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Hello,
I frequently make use of the `prefix` argument to [`saveHDF5SummarizedExperiment`](https://bioconductor.org/packages/release/bioc/manuals/HDF5Array/man/HDF5Array.pdf#Rfn.saveHDF5SummarizedEx…
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Hello, and thank you for your excellent work on condiments. I'm following along with the KRAS analysis vignette you outlined on the condimentsPaper repository on my four-condition dataset that I conve…
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Hi all!!
I've been trying to use the function gdcRNADownload() to download RNAseq data from TCGA but no matter what RNAseq type I try, I always get the same error:
Successfully downloaded: 0
Wa…
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Anyone else have these issues trying to convert using SeuratDisk?
My main error is "Error in if (!x[[i]]$dims) { : argument is of length zero" (see below)
Convert seemed to work ok, except it has a…
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Hi, thanks for the great package.
I am tweaking some data I have and need to remake an ArchR projects with new peak set. I ran the addReproduciblePeakSet() command below and it is now having diffi…
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Dear Rafa et al.,
I am running bumphunter() in an ubuntu server (100g of swap and 400g of RAM) on data from approx. 2000 EPIC arrays. P I am getting the following message "Error in nulltabs[[i]] :…
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Hello,
I'm trying to run runStreme but the function returns an error when it tries to find the html file.
Error in error_file_not_exist(.) :
/mnt/c/Users/folder1/streme.html was not found.
I c…