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add this to the ctat genome lib builder for FI for quick retrieval instead of building on the fly
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I'm working on a very large genome (4.5 G), when we run medaka, we gets the following error which seems to be related to bam indexing process because of the large genome, I know it would work with sam…
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In addition to cfDNA, whether the ichorCNA can be used for gDNA?
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Hello SRY team,
Thank you for creating an useful tool. I am currently trying to use it to assemble a better genome that includes sex chromosomes. I was curious about few things that I couldn't find…
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bash create_Drop-seq_reference_metadata.sh \
-n Homo_sapiens_genome_annotation \
-r /mnt/d/linux/ceshi/hg38.fa \
-s Human \
-g /mnt/d/linux/ceshi/hg38.gtf \
-o /mnt/d/linux/ceshi
Er…
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Just an issue to collect any relevant papers. For example, there's a whole Genome Biology issue on graph genomes at
https://www.biomedcentral.com/collections/graphgenomes (also see "Pangenome Graph…
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1. Is REGENIE capable of analyzing mitochondrial genomes?
2. If yes, what are the parameters that I need to set to analyze mitochondrial genomes?
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If the species being studied is not a model species, how to use cisDynet R for downstream analysis?
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Hi, I want to make sure that when I use smoove call for tumor/normal pairs.
Is there a requirement for the order of two bam files?
Which command is correct ?
The command is as follows:
`smoove ca…
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Found with @aviczhl2 's phylogenic tree analysis tool.
JN.1.29.1> C8917T> G22599C(S:R346T)> G18318T, C20930T(Orf1b:T2488M)> A259G, A28984G> T21728G(S:L56V)
Query: C8917T, A9935G, G22599C, -A405G
…