-
## Expected Behavior
`metaeuk easy-predict --threads 1 ...` command as below does not return error.
```
$ metaeuk easy-predict --threads 1 /trinity_out_dir.Trinity.fasta /busco_downloads/linea…
-
Is it possible to extract the pdb files for a subset of entries from a folcomp database. I am looking for something like this:
```bash
foldcomp decompress --subset id_list.txt afdb_uniprot_v4
``…
-
Thanks for developing AlphaPulldown! I'm excited to try using it
I would like to use mmseqs2 locally as outlined in the mmseqs2_manual, as I have already used colab_search to generate lots of .a3m…
-
I downloaded the pdb and swissprot databases using the databases command and the program runs flawlessly. I was wondering how to get the taxonomic information for the hits and the fasta sequnces from …
-
## Expected Behavior
Aligning human AlphaFold proteome to the Mycobacterium tuberculosis proteome
## Current Behavior
Index table: counting k-mers
/data/local/vfranke/VFranke_Structures/TMP/…
-
## Expected Behavior
Run example without error
```
foldseek createdb example/ targetDB
foldseek createdb example/ queryDB
foldseek search queryDB targetDB aln tmpFolder -a
foldseek aln2tmscore q…
-
## Expected Behavior
The command `foldseek easy-search data/${PDB_ID}.pdb dbs/alphafold_proteome result.m8 tmp_search` should search a predownloaded database `Alphafold/Proteome`.
## Current Be…
-
The procedure described in https://github.com/steineggerlab/foldcomp#subsetting-databases actually breaks the database.
As an example, try to get the first 10 structures of the H sapiens proteome:
`…
-
Hi,
When I run `createdb; createindex` on a fasta DB file, I generally observe the end result (all the generated output files together) is roughly ~10x bigger than the input fasta file. Most of it …
-
## Expected Behavior
## Current Behavior
## Steps to Reproduce (for bugs)
Please make sure to execute the reproduction steps with newly recreated and empty tmp folders.
## Foldssek Output (f…