-
### Ask away!
Hello!
[nextflow.log](https://github.com/epi2me-labs/wf-human-variation/files/14007577/nextflow.log)
Human-variation-workflow has stopped with an error exit status(137)
I guess i…
-
Hi,
I am doing a denovo assembling a nanopore data of R7.3 chemistry. At first I converted the fast5 to fasta using poretools. After that I followed the pipeline, for the denovo assembly using minima…
-
Hi,
I used ~30X ONT data and ~300X illumina data to assemble a high heterozygous genome. All backbone and asm file are empty, why?
The several last line of the 3sr_k49_a3.log file are
tra…
-
Following discussion already have in post #2, I did some tests on two of our samples. However, I observe different results among them. Note that for the simplicity,
- the base calling is done wit…
-
# Issue Report
## Please describe the issue:
Dear Oxford Nanopore team, thank you very much for providing awesome tool and technology.
I'm running dorado v. 0.8.3+98456f7 on a Direct RNA sequ…
-
Hello,
I am running MaSuRCA on a plant genome, I have PacBio and Illumina data as input.
I just noticed this notification:
```
$ ./assemble.sh
[Mon Sep 21 16:13:10 CEST 2020] Processing pe librar…
-
Hi, I run the HERA using test data and got an error about bwa mem.
I run the code below and got an 1.pbs file,
perl $Working_Script/09-Qsub-Pair_Alignment.pl list_outer_pacbio.txt $Working_Script $q…
-
**Question or Expected behavior**
Genome assembly of the autotetraploid plant
Hi, I have recently assembled a genome using nanopore reads, but the results are not good. It may result from its autot…
-
Hi,
I get de novo assembled E. coli genomes from a sequencing provider that we use in FASTA format.
I'd like to call mutations in those assembled genomes.
Since Breseq now can handle nanopore rea…
-
Hi,
I tried using your tool which runs perfectly, but none of my SVs are lifted.
I'm trying to lift SVs called with NanomonSV tool from nanopore data with T2T reference genome to hg38 to annotate …