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I have a question when using prefetch 3.0.2 to download on a linux server,there is a trouble:
Current preference is set to retrieve SRA Normalized Format files with full base quality scores.
How ca…
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Hello, I am following the Bactopia Beginner's guide with my own ONT sequencing data. When executing the code `bactopia --sample S_Livi_MB4531 --ont path/to/S_Livi_MB4531.fastq.gz`, I receive an error …
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I got error below.
How could I do that?
```
python ena-fast-download.py ERR962744
03/12/2021 02:27:29 PM INFO: Using aspera ssh key file: $HOME/.aspera/connect/etc/asperaweb_id_dsa.openssh
03/1…
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Hello,
I want to install SRA tools as root and want to make it available to non-admin local users.
(1) I unpacked SRA tools and ran the `vdb-config -i` command as root.
- in MAIN, I set (X…
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Hi, normally we have columns below on Serratus search on PgAdmin. My question about is it possible to add new column to the Serratus search on PgAdmin? Because I need to add "SRA Title" column to sear…
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### Data Owner Name
Kernelogic
### Data Owner Country/Region
Canada
### Data Owner Industry
Life Science / Healthcare
### Website
https://singularity-browser.kernelogic.ca
### …
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Hi Team,
I'm using SNPArcher on a resequencing dataset from NCBI SRA. I downloaded the SRA run table for 2 samples for testing purposes and made the necessary modifications as per the documentation…
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https://mp.weixin.qq.com/s/5cyuJIw269rIqqd8JtEIdg
ixxmu updated
6 months ago
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Hi Dr. Cullen
I have downloaded the SRA files of dogs from NCBI and converted them into FASTQ format using the SRA toolkit in the cluster. I am trying to use WAGS to align them to CanFam4 to get ou…
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I'm trying to install sra tools 3.0.6 to a micromamba environemnt, however I'm getting the following error message:
error libmamba Could not solve for environment specs
The following package …