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add the protein interaction data from wormbase.
note that these encompass genetic and physical interactions, as well as group-wise interactions in complexes, which requires a bit of modeling.
the …
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THis is mitochondrial termination factor
- [ ] Mterf4 | mitochondrial transcription termination factor 4 | | protein targeting to mitochondrion | | MGI | Mus musculus | IMP | | cgi-12 protein…
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There is some concern whether GO should be given an extra column as it is just
one of several systems to classify proteins. F.e. some people might want to add
Reactome pathway accessions instead…
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Transcripts and protein representations could be divided in three tabs: transcripts, proteins (rather, protein domains) and transcripts + proteins. The last would pair transcripts and respective prote…
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Do you have plans for supporting protein sequences?
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Not every metal-containing structure is a protein! Consider cases where they are absent.
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(RFAA1) [2200012187@hr-6-6-login RoseTTAFold-All-Atom]$ python -m rf2aa.run_inference --config-name protein
/gpfs/share/home/2200012187/mambaforge/envs/RFAA1/lib/python3.10/site-packages/hydra/_inter…
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Hi,
Is it possible to fine-tune or re-train the ESM-3 model with the protein sequence and structure or pdb file, and then apply the fine-tuned model to generate sequence or structure embeddings?
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I was able to finish running the example prediction (rf2na.sh, ../run_RF2NA.sh rna_pred rna_binding_protein.fa R:RNA.fa) with no error messages after compilation. However, I did notice that there is n…