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Hello,
Thanks for a great package and publication! I am trying to use dyneval to compare some trajectories that I've built using infer_trajectories, and I looped over it to run the same set of meth…
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### Enzyme, ADAR (proof-read and correct mistakes in RNA)
[**ADAR editing enzymes** are found in all multicellular animals and are conserved in sequence and protein organization. The number of ADAR g…
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```
What steps will reproduce the problem?
1. Use touch screen/on screen keypad to enter library card.
2. See library card number on screen!
What is the expected output? What do you see instead?
I ex…
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Hello, when i run this :
cistopic_obj.add_cell_data(cell_data, split_pattern='__')
The cell_data is like this:
 tutorial, downloaded the CSV files from [10X website](https://support.10xgenomics.com/singl…
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Hi, thanks for your pipeline, I installed the pipeline followed the instructions, the error comes out as missing files, I believe it's not take input in the demultiplex stage, and I don't know why the…
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Hiya,
Can Arriba be used to detect fusions in single-cell RNAseq data (e.g. Smart-seq2). I expect to see a greater number of false positives compared to bulk RNAseq, and with a lower number of read…
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Hello,
The fragment file returned by `chromap` is very useful for scATAC-seq, but sometimes, we need the peak by cell count matrix (or .mtx) for further analysis. Is there a way of getting this mat…
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I have run Tutorial 5: "De novo Discovery of Cell States and Ecotypes in scRNA-seq Data" with my own scRNA dataset, which ran appropriately. However, I am now trying to use that recovered ecotype from…
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Hello!
This is a really great approach to scATAC. Any help would be greatly appreciated!
I have several biologically similar samples. The ability to resolve the individual samples in umap and t…