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We've identified 65 cells in this dataset that have all 0s for raw counts (no other layer is present), which will not be valid starting with schema 4
https://cellxgene.cziscience.com/collections/a238…
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0) Sanity test a migration with a small subset of datasets in an rdev pointing at migrate script in `git+https://github.com/chanzuckerberg/single-cell-curation/@auto/update-convert-py-to-4.0.0#subdir…
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### What happened?
When running `gget.cellxgene(
species="homo_sapiens", meta_only=False, census_version="2023-05-15", column_names=COLUMN_NAMES,
assay=PROTOCOLS, is_primary_data=True
)`
…
rpeys updated
11 months ago
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To improve data quality, `cellxgene-schema` must warn when:
1. The value of `assay_ontology_term_id` is EFO:0008913 for "single-cell RNA sequencing".
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### Prefix
cellguide
### Name
Cell Guide
### Homepage
https://cellxgene.cziscience.com/cellguide
### Source Code Repository
bioregistry
### Description
CellGuide is a comprehensive resource f…
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Verifies that this works as expected: https://app.zenhub.com/workspaces/single-cell-5e2a191dad828d52cc78b028/issues/gh/chanzuckerberg/single-cell/526
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Reported by @jahilton
• 25 collections currently contain some unknown
• 12 of those are all unknown
To improve data quality, `cellxgene-schema` must warn when:
1. The value of `sex_ontology_…
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To reproduce:
- Go here: https://cellxgene.cziscience.com/e/dc30c3ec-46d6-4cd8-8ec1-b544a3d0f503.cxg/
- On my macbook, 100% zoom shows me this:
- Decreasing to 90% zoom shows this
The bre…
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Getting this error when trying to save a file
`IntegrityError: FOREIGN KEY constraint failed `
seems like I had initially 2 processes that were saving files and I got this error.
Now I stoppe…