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Does `tigmint-make tigmint-long` support FASTQ reads from other platforms than 10x genomics chromium?
```
$ bash -x tigmint.sh SCRATCH=/scratch/mmokrejs/job_3024675.cerit-pbs.cerit-sc.cz TMPDIR=/s…
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Hi,
Thank you for the wonderful tool. I wonder if it is possible to modify VAE's loss function the following way.
Say in a binning job, as auxiliary information from alignment, we know that so…
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Hello,
I have been using v3.3.0b to assemble plant genome with Slurm. Our network has strict job number limits so I had to modify create_mega_reads.sh and jf_aligner.sh to work with parallel. Every…
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When providing Illumina and Nanopore reads, the pipeline fails at `rule circularize_final` because there is no directory called `{sample}/3.circularization/3.circular_sequences/sh`, which should have …
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I am trying to run Canu to assemble some nanopore reads. I have attempted some fixes from other threads but I am a little stumped on how to resolve this. Does anyone have any suggestions?
Command:
…
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Hello @ArtRand
I would like to confirm that the scores obtained in the DMR are indeed calculated based on the last two columns, i.e., pct_a_samples and pct_b_samples.
Specifically, I would also lik…
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Hello,
I am using megalodon to identify methylations in the whole genome, not only in the CpG islands.
I was wondering if it is possible to use Methplotlib to visualise also those regions outside …
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**Describe the bug**
Floating point exception during nextgraph
**Error message**
Main task log
[6250 INFO] 2022-12-23 12:41:12 skip step: db_split
[6250 INFO] 2022-12-23 12:41:12 skip step: raw…
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When I check whether WarpSTR works correctly by running: bash run_test_case.sh , I get this traceback:
ONT Guppy basecalling software version 6.0.6+8a98bbc
config file: /work/softwar…
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### Ask away!
Hello!
[nextflow.log](https://github.com/epi2me-labs/wf-human-variation/files/14007577/nextflow.log)
Human-variation-workflow has stopped with an error exit status(137)
I guess i…