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Hi,
I try to run quickmerge with two wgs-assemblies of a1.4 Gb genome but run into a segmentation fault in the merge step. N50 of the assemblies is about 200 Kb.
my commands:
```
nucmer -l 100 -p…
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I am exploring automating the pyani tests with TravisCI.
Ideally I would run this within their Python VM, but currently I am trying the TravisCI R support on the assumption this is the easiest way to…
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Hi,
some things I noticed while trying quickmerge:
make_merger.sh has wrong compilation instructions
should be "g++ -Wall -o quickmerge quickmerge.cpp qmergelib.cpp -I." instead of "g++ -Wall work_…
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One of my runs failed with the following error message. Do know what is causing it and/or how to fix it?
```
# COMPLETETIME /home/thackl/software/MUMmer3.23/mummer finishersc-2.0/outGapFillRefine08.n…
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I am trying to install circlator on Ubuntu 14.04
I am having an issue with numpy for python3
When installing circlator using brew I get the following error
`Error! numpy for Python3 not found.
Pleas…
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Hi,
I sometimes use your script calculate_ani (thanks..) for comparing genomes that may or may not have any sequence overlap, and I got this error:
```
INFO: Processing .delta files
INFO: Processing…
wwood updated
9 years ago
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AEKE02023669 ? SL2.50sc05925 MINUS
AC244870 ? SL2.50sc05925 PLUS
AC244937 ? SL2.50sc05925 MINUS contig469
AC244803 ? SL2.50sc05925 PLUS contig469
AC244944 ? SL2.5…
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Here is my log error of the instalation. I already installed all dependencies. And in the end I still get this error. I read everything but could not find anything that could be solved by this.
Can s…
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Hello.
I encountered another problem.
I almost finished every iMetAMOS step and could see Postprocess/out/html/summary.html
In that html page, Preprocess, Assemble, MapReads, Validate, FindORFS, Abun…
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Check AlignCoordGroup.pm
sample nucmer output
> 18361542 18377740 1 16206 16199 16206 99.94 70787664 203766 0.02 7.95 1 1 SL2.50ch03 Contig90
> 53614018 53614614 …