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check these repos:
- https://github.com/GenomicsStandardsConsortium/mixs
- https://github.com/GenomicsStandardsConsortium/mixs/blob/issue-511-tested-schemasheets/schemasheets/tsv_in/MIxS_6_term_…
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Hi Ming,
Can I kindly request for the addition of lexicons (NCBI Taxomony ID) of the following bacteria strains on the REDU sample information template?
1. Xanthomonas campestris 8004 | 314565 …
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Would be useful to give quick visual summary of what organisms are collected in the alignment.
One option: represent aligned sequences in a tree or simply a bar-chart, colored by species membership…
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Hello!
I am relatively new to metagenomics and I've been using Kraken2 for my analysis. I was wondering if Kraken2 has some sort of way of removing DNA reads that do not belong to the sample analyz…
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请问可以提供一下图片中的已经处理过的数据吗？或者处理数据相关的代码
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https://docs.google.com/document/d/1KDD9YEzNNgvmBKQFN6DK0KjQYiNyKSp4S1tAlLnBHSw/edit
SOPHIE (05/04):
Using minicells to protect strawberries from fungal disease
(dsRNA encapsulated by minicel…
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I am running into issues attempting to generate ROIs for a [p-site offset analysis](https://plastid.readthedocs.org/en/latest/examples/p_site.html) on e. coli. The generated ROIs do not include any up…
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http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:47040
Lipid A
ChEBI ID CHEBI:47040
Definition The glycolipid moiety of bacterial lipopolysaccharide.
Textual def is fine. Structure is tru…
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```
STAR 2.3.0e
Linux dna 3.2.0-41-generic #66-Ubuntu SM
THIS WORKED:
* The fasta file is a 2.8 Mbp bacteria
STAR --runMode genomeGenerate --genomeDir ref --genomeFastaFiles 6008.fna --runThreadN 3…
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Hi,
I ran the following command:
kraken-build --standard --threads 8 -db kraken_standard_db
I had a problem with jellyfish so introduced the jellyfish-hash size command...
kraken-build --s…
lec49 updated
6 years ago