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Current wording:
NOTE
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The content of this page is scheduled to be reviewed. Improved wording will be posted as it becomes available.
Details
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For full details, see this pa…
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I'm looking at annotations in the proteins and humangenes domain in the `google_patent_research.annotations` table. It appears that the annotations themselves are normalized to their preferred name, b…
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children of 'non-human animal disease'
Frank Nichols is to provide an OWL file.
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Hi,
I am trying to use the pipeline on an already assembled transcriptome (a single FASTA file with ~300k sequences) which I am putting in a directory called `onlyAnn` as per the instructions. I be…
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> Error in pairwise_termsim.enrichResult(x, method = method, semData = semData: no enriched term found...
My supervisor has asked me to plot the top ten ranked sets if none are significant, but tha…
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That issue of unresolved IDs is coming back
tagging @balhoff @vanaukenk
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PomBase have made curated associations to MONDO terms.
It would be useful to also load instead all MONDO associations to human proteins.
We could use this query to cross-check our associations by …
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**Reported by cmungall on 2008-01-29 00:45 UTC**
in general a class should have zero, two or more subtypes.
eg
single_is_a_child SO:0000872-trans_spliced_mRNA SO:0000479-trans_spliced_transcript
…
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Pulling out of
https://github.com/geneontology/annotation_extensions/issues/75
so it does not get lost
Which relationship can be used to annotate things which are "indirect effects" and not p…
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TL;DR - there are uniprot KW and EC annotations to this family that contradict the literature.
I'll take yeast RAD26 as an exemplar here, but similar patterns are seen in orthologs.
Uniprot has …